BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
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Updated
Jul 15, 2024 - Python
BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
An SGC Open Chemistry Networks Project (number 19) dedicated to finding hits vs CHIKV nsp2 helicase based on a HTS of a Enamine Covalent library.
An SGC Open Chemistry Networks Project (number 21) dedicated to finding hits vs CHIKV nsp2 helicase based on a HTS of a Asinex library.
This project aims to develop a chemical probe of CHIKV-nsP3-macrodomain starting from a fragment screen
An SGC Chemical Networks Project devoted to the DENV Rdrp, focusing specifically on exploring the LifeChemicals library. Use the link below to learn about our other READDI-AViDD projects.
An SGC Chemical Networks Project devoted to the DENV Rdrp, focusing specifically on exploring the Enamine covalent library. Use the link below to learn about other READDI-AViDD projects.
Scripts for use with BIOMERO
Frontiers in 2D Perovskene: Tailoring ABC3 Perovskite Structures for Next-Generation Material Applications
This project aims to develop a chemical probe of SARS-CoV2-NSP14 starting from a fragment screen
This pipeline facilitates setting up ligand docking against a protein using AutoDock-GPU. It streamlines the process of docking a ligand library onto a protein structure, leveraging the enhanced performance of AutoDock-GPU for faster results.
Visualizing the Equilibrium and Kinetics of Protein-Ligand Binding and Competitive Binding
Tox21 quantitative high throughput screening (qHTS) 10K library data
Catalyst Library for Material Discovery Studies, including Transition Metal and Transition Metal Derivatives. Materials are compiled from online open-source databases, as well as own calculations. A GUI is included for convenient input file generation. Please expect this to be updated regularly.
EPA data on 1,800 chemicals across 700+ assay endpoints
Plan and analyse large-scale liquid transfers
High-throughput detection and enumeration of tumor cells in blood using Digital Holographic Microscopy (DHM) and Deep Learning.
Performance and Robustness trade-offs in yeast - analysis of phenotypic data from 24 Saccharomyces cerevisiae strains grown in 29 conditions
💊 A project examining data from High Throughput Screening center in Poznan.
🏮 Parsing and analysing platereader absorbance and fluorescence data.
pytcpl is a streamlined Python package that incorporates the levels 4 to 6 of tcpl+tcplFit2, providing concentration-response curve fitting and hit-calling. It utilizes the Invitrodb version 4.1 release (September 21, 2023) as backend database.
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