🚀 A sequencing simulator
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Updated
Jul 5, 2024 - Python
🚀 A sequencing simulator
Automated pipeline for amplicon sequence analysis
Illumina pipeline for 16S sequencing, completed in Python.
A pipeline for variant calling from P. falciparum short reads generated from Illumina and ONT libraries
Illumina short read assembly data pipeline for phage
Series of scripts to analyse 454 and Illumina sequences in SSU amplicon against MaarjAM database
Copy Number Variant Analyzer for Illumina Dragen files. Work in Progress...
Create fastq symlinks for selected samples in sequencer output directories based on several criteria
Group B Strep pipelines for large dataset gene analysis from Illumina sequencing.
RNA-Seq Pipeline for processing paired-end FASTQ transcripts generated from Illumina sequencing. The pipeline trims adapter sequences, aligns transcripts to a specified region of interest on the reference genome, and facilitates downstream analysis.
LpSIM is a virtual platform for simulating the different stages of the Illumina sequencing library preparation workflow and the possible artefacts that may be introduced at each stage.
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