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A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
This is the pipeline that handles SARS-CoV-2 samples from the health sector in Region Midtjylland (Illumina PE)
Detection of Saccharomyces paradoxus DNA across Saccharomyces cerevisiae, and vice versa.
ABBA-BABA test conducted on Saccharomyces cerevisiae strains using whole-genome alignment.
Workflow and R scripts for Giongo et al. (2024)
IMOM - A pipeline for interacting with, processing, and analyzing multi-OM datasets in phylogenetic and evolutionary context
Accompanying information to a scientific publication on the assembly of bacterial genomes using Illumina and nanopore sequencing data using Unicylcer.
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