Amplicon sequencing analysis workflow using DADA2 and QIIME2
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Updated
Jun 18, 2024 - Nextflow
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Assembly and intrahost/low-frequency variant calling for viral samples
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Demultiplexing pipeline for sequencing data
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
UPHL's Reference Free Pipeline
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)
A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies
Pathogen whole genome sequence (WGS) data analysis pipeline
A containerized nextflow pipeline designed to annotate prokaryote genomes.
Nextflow pipeline for short-read alignment
gwas workflow from raw intensity data to in-silico functional mapping
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