Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
-
Updated
Jun 14, 2024 - Nextflow
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
UPHL's Reference Free Pipeline
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
Assembly and intrahost/low-frequency variant calling for viral samples
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Pathogen whole genome sequence (WGS) data analysis pipeline
Demultiplexing pipeline for sequencing data
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
gwas workflow from raw intensity data to in-silico functional mapping
A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies
Nextflow pipeline for short-read alignment
A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)
A containerized nextflow pipeline designed to annotate prokaryote genomes.
Add a description, image, and links to the illumina topic page so that developers can more easily learn about it.
To associate your repository with the illumina topic, visit your repo's landing page and select "manage topics."