A repository containing general scripts that are useful within bioinformatics
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Updated
Mar 2, 2017 - Shell
A repository containing general scripts that are useful within bioinformatics
Find shared SNPs between different microarray chips
DEMUX, ALIGN, DESEQ2 DGE CALLS
Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.
bash scripts used in the analysis of Illumina sequence data
Data and scripts associated with H. limbata 2014 1st instar transcriptome
These scripts were used to bioinformatically process the NGS data associated with the manuscript entitled "Illuminating the bacterial microbiome of Australian ticks from companion animals with next-generation sequencing", authored by Telleasha L. Greay, Kimberly L. Evasco, Megan L. Evans, Paola Magni, Una M. Ryan and Peter J. Irwin. The raw data…
Assembly of chloroplast genome using long-reads and short-reads for Genomics Course 2021 (MSc Bioinformatics for Computational Genomics)
RNAseq pipeline centered on Salmon
Testing structural variant (SV) callers for illumina germline whole genome sequence (WGS) data (human).
Analysis documentation for research into the variants associated with hyperparathyroidism. Illumina, germline, human, whole exome sequence (WES) data from the CCDHB.
GATK WGS workflow
metagenome simulation for targeted and reduced-representation sequencing
A simple program to generate .vcf and plink format files from .idat files
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