🎨 Image processing toolbox for R
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Updated
Mar 16, 2024 - R
🎨 Image processing toolbox for R
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
Tools for Plant Image Analysis
An R package for conducting co-localization analysis. Edit
A shiny based package to extract data from images by clicking on them
A webapp to make visualizing and analyzing CellPathfinder data easier. CellPathfinder is a high content cell image analysis software from Yokogawa. https://terrianl.shinyapps.io/GraphMaster9000/
3D Analysis of confocal images of microbial biofilms/communities
A Shiny App for visualizing and evaluating handwritten digits.
R-based Utilities for Hiplex
Code repository for project focusing on blood cell detection and diagnostic prediction from peripheral blood slides
This repository contains code used to develop an automated bleaching classifier in CoralNet (https://coralnet.ucsd.edu). See README for overview of code, and link to more information on the development of the classifier.
Automatic classification of bacterial species using Gram-stained images
Single cell high-content analysis of three-color immunocytochemistry image data
An R-based system for checking and shrinkage quantification using disc-derived wedges
HSM3 implements the Hasler and Süsstrunk M3 metric of image colourfulness
TubAR (Tuber Analysis in R) provides potato researchers with a simple means of quantitative phenotyping of tuber images through R.
Images, data and R code for the estimation of fractal curvature from: Spodarev, E., Straka, P., & Winter, S. (2015). Estimation of fractal dimension and fractal curvatures from digital images. Chaos, Solitons & Fractals, 75, 134–152. <doi:10.1016/j.chaos.2015.02.011>
A shiny app for conducting co-localization analysis.
Rosette Detection with SVM
Code for the PeerJ paper (colocr: an R package for conducting co-localization analysis on fluorescence microscopy images)
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