metabarcoding
Here are 35 public repositories matching this topic...
Shiny app that creates files used by the OBITools to demultiplex metabarcoding sequences
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Apr 12, 2024 - R
Data & Code Supplement for "Environmental DNA as a management tool for tracking artificial waterhole use in savanna ecosystems"
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Aug 9, 2022 - R
Supplementary files for the paper "Environmental DNA metabarcoding of Danish soil samples reveals new insight into the hidden diversity of eutardigrades in Denmark"
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Jun 9, 2023 - R
Datasets and code used to create figures in "Hajibabaei et al., 2019. Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples. PLoS ONE 14(12): e0225409."
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Dec 20, 2019 - R
A primary goal of this research was to characterize vent plume biogeography across a spatial gradient. This study was done in collaboration with OceanX during the 2021 Young Explorers Program.
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May 24, 2023 - R
Contains scripts for biodiversity assessments of European lakes
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Mar 1, 2022 - R
A R script for the study of the prokaryotic community of the sponge Dactylospongia metachromia
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Jan 29, 2023 - R
A DADA2 pipeline using rbcl markers libraries and a Phyloseq script to output graphical results.
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Apr 12, 2024 - R
Scripts used to analyse metabarcoding data from two different gene regions to assess which provides a more complete picture of the eukaryotic marine microalgae community (EMC).
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Jun 19, 2024 - R
Code and repository links for Klein & Frühe et al. 2024
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Jul 21, 2024 - R
A set of functions for filtering erroneous sequences in eDNA metabarcoding data
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Mar 30, 2023 - R
Primer scripts to produce meaningful visualisations from pre-processed metabarcoding data
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Jul 13, 2023 - R
A custom bioinformatic workflow for UPDX (Universal Parasite Detection assay) sequences analysis.
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Mar 25, 2022 - R
Public repository of data and analyses from Dirks and Jackson (2020), "Community structure of Arbuscular Mycorrhizal Fungi in Soils of Switchgrass Harvested for Bioenergy", Applied and Environmental Microbiology 86 (19)
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May 4, 2020 - R
R functions and workflow for submitting amplicon sequence data to the ENA.
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Apr 17, 2024 - R
Code and plots for the paper of Walden et al., 2021, https://doi.org/10.1093/femsec/fiab081
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Jun 22, 2021 - R
Metabarcoding Joining Obitools3 & Linkage Networks In R
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Jun 6, 2024 - R
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