Code and repository links for Klein & Frühe et al. 2024
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Updated
Jul 21, 2024 - R
Code and repository links for Klein & Frühe et al. 2024
Metabarcoding pipeline
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
Scripts used to analyse metabarcoding data from two different gene regions to assess which provides a more complete picture of the eukaryotic marine microalgae community (EMC).
Metabarcoding Joining Obitools3 & Linkage Networks In R
Accurate sample inference from amplicon data with single nucleotide resolution
R functions and workflow for submitting amplicon sequence data to the ENA.
Shiny app that creates files used by the OBITools to demultiplex metabarcoding sequences
A DADA2 pipeline using rbcl markers libraries and a Phyloseq script to output graphical results.
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
Shiny application to access metaPR2 database
Primer scripts to produce meaningful visualisations from pre-processed metabarcoding data
Supplementary files for the paper "Environmental DNA metabarcoding of Danish soil samples reveals new insight into the hidden diversity of eutardigrades in Denmark"
A primary goal of this research was to characterize vent plume biogeography across a spatial gradient. This study was done in collaboration with OceanX during the 2021 Young Explorers Program.
Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
A set of functions for filtering erroneous sequences in eDNA metabarcoding data
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
A R script for the study of the prokaryotic community of the sponge Dactylospongia metachromia
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