The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
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Updated
Jul 3, 2024 - MATLAB
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
Genome-scale model of Yarrowia lipolytica.
Diversity-based enumeration of optimal context-specific metabolic networks
Determination of product-growth-coupled strain designs employing stoichiometric metabolic models.
Impose constraints on enzyme abundances ratios in enzyme-constraint metabolic models
EMILiO
Genome-scale metabolic model of Cordyceps militaris
Genome-scale metabolic model of Rhodotorula toruloides
Uses an evolutionary algorithm to design hundreds of microbial strains for overproduction of a desired chemical, while minimizing the number of required designs
Source code for EMILiO: A fast algorithm for genome-scale strain design.
Code for Model-based Design of Bistable Cell Factories for Metabolic Engineering
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