Collect info about IRIDA uploads for display in monitoring site
-
Updated
Oct 24, 2023 - Python
Collect info about IRIDA uploads for display in monitoring site
Automated upload of sequence data to IRIDA platform
Automated uploading of sequence data into IRIDA instances, used in conjunction with auto-irida-azure-upload
Collect outputs from BCCDC-PHL/routine-sequence-qc pipeline for usage by BCCDC-PHL/routine-sequence-qc-site
Small tools/scripts written in python
Nextflow Wrapper for Mykrobe
Bioinformatics pipeline used for the RCPA WGS PTP
A reference-free statistical approach to diversity-generating & mobile genetic element discovery
Automated genomic analysis of SARS-CoV-2 sequence data
Nextflow wrapper for ktmeaton/ncov-recombinant
Automation of Genomic Analyses for Carbapenemase-Producing Organisms (CPOs)
Genomic analysis pipeline for genotyping of Hepatitis C Virus
Python implementation of barrnap (Bacterial ribosomal RNA predictor)
Align against a reference genome and call variants
Pipeline to make pairwise comparisons of matched fasta sequences.
Prepare a report for taxonomic assignment based on 16S rRNA sequences, using BLAST.
Evaluating Nanopore-based bacterial variant calling
Collect Routine QC for Nanopore Sequence Data
Collect QC data from Carbapenemase-Producing Organism (CPO) genomic analyses
A Core Genome MLST (cgMLST) Typing Tool
Add a description, image, and links to the microbial-genomics topic page so that developers can more easily learn about it.
To associate your repository with the microbial-genomics topic, visit your repo's landing page and select "manage topics."