This website gives an introduction to microbial community analysis.
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Updated
Apr 19, 2018 - HTML
This website gives an introduction to microbial community analysis.
🦠 📓 a microbiome paper
QUOR'EM: Query, Update, Organize, and Render 'EM
This repository presents the files and methods used for statistical analyses of the faecal bacterial community profiles and SCFA data generated from calves raised on three different allowances of milk replacer.
Code for reproducing results published in the paper: "Consistent changes in the intestinal microbiota of Atlantic salmon fed insect meal diets"
Meta-analysis of metagenomes via machine learning and assembly graphs reveals strain switches in Crohn’s disease
hamPCR + Douglas-fir + needle fungi
En este repositorio se crearán diferentes flujos de trabajo para el análisis del microbioma con Bioconductor.
The scripts contained in this repository relate directly to the work conducted by the Tree Root Microbiome Project (TRMP) led by Dr Steve Wakelin.
MetaTrinity is a novel metagenomic analysis tool employing efficient containment search techniques and heuristics for read mapping to achieve significant speedup while maintaining high accuracy. This positions MetaTrinity as an efficient solution, optimally balancing speed and precision in metagenomic analysis.
iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline
MicrobioSee2, a desktop sofware for visulization of microbiome result, which contian multiple modules, such as Alpha Diversity, Beta Diversity, Species Conpositions, volcano plot, and pie chart.
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