microbiota
Here are 21 public repositories matching this topic...
biomeUtils is Module-01 of the RIVM-ToolBox. R pkg with common utilities for microbiome research done at the RIVM.
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Jul 10, 2023 - R
ECCMID 2024 Abstract #04375. Code used to perform the analysis and figures.
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Dec 11, 2023 - R
Data and analysis code for the Indian gut microbiota study
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Apr 2, 2020 - R
Package Containing Utility-functions to Work with Microbiota-data.
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Feb 17, 2021 - R
Accurate sample inference from amplicon data with single nucleotide resolution
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Mar 11, 2024 - R
A summary of the scripts used in performing quality filtering and data analysis of Illumina high throughout bacterial sequences involved in this freshwater aquatic invertebrate microbiota study.
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Sep 17, 2020 - R
The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures
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Dec 2, 2022 - R
An ensemble of functions for easier and quicker preliminary microbiome analyses
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Sep 26, 2024 - R
Association Between Gut Microbiota and Hypertension
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Jun 24, 2020 - R
Papers in which I have been involved as data scientist. For the title, info and and/or the DOI of each one of them, check the corrispective "Paper_title_and_info" txt file
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Oct 3, 2024 - R
A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
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Jun 3, 2024 - R
biomeViz is Module-03 of the RIVM-ToolBox. R pkg with data visualization tools for microbiome research done at the RIVM. . Development Phase: Active Development
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Jul 18, 2022 - R
A set of R scripts for the analysis of microbial profiles
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Feb 7, 2018 - R
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Sep 17, 2018 - R
Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output
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Jul 19, 2021 - R
R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
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Sep 14, 2024 - R
Make Picrust2 Output Analysis and Visualization Easier
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Sep 24, 2024 - R
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
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Jul 19, 2021 - R
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