A tool for conducting a gene screen on assemblies, producing an SRST2-like output.
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Updated
Dec 28, 2022 - Python
A tool for conducting a gene screen on assemblies, producing an SRST2-like output.
MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.
multi-locus sequence type clade classifier for Clostridioides difficile
mlst2dist.py computes a distance matrix from a chewBBACA MLST alleles table, using Hamming Distance modified with correction for missing data
In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data
Epitypification pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
List and download schemes from pubMLST.org and other BIGSDB servers
Fast k-mer based tool for multi locus sequence typing (MLST)
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