The Open Forcefield Toolkit provides implementations of the SMIRNOFF format, parameterization engine, and other tools. Documentation available at http://open-forcefield-toolkit.readthedocs.io
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Updated
Jun 14, 2024 - Python
Molecular dynamics allows the atoms and molecules to interact for a fixed period of time, giving a view of the dynamic "evolution" of the system.
The Open Forcefield Toolkit provides implementations of the SMIRNOFF format, parameterization engine, and other tools. Documentation available at http://open-forcefield-toolkit.readthedocs.io
Python library for reading, writing, and converting computational chemistry file formats and generating input files.
ZnH5MD - High Performance Interface for H5MD Trajectories
A lightweight package to parse and process molecular simulation files
mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data
protein conformational spaces meet machine learning
Simulating Ionic Solutions Near Water Interfaces
Open source library to work with molecular systems
Polymer chain simulation: Linear or circular configurational, optional and adjustable EV.
Large scale simulations made simple.
MDANSE: Molecular Dynamics Analysis for Neutron Scattering Experiments
Set of tools to generate a multi-eGO force field to perform molecular dynamics simulations
Various integrations to the Schrodinger ecosystem. With major interest on analysis tools for Molecular Dynamics simulations run with Desmond.
scalable molecular simulation
The Open Free Energy toolkit
SAPT energy calculator built using MDAnalysis and Psi4
Differentiate all the things!
Molecular Dynamics - Simulation Analysis and Preparation Suite
User developments to extend and modify core pyiron functionality