MDAnalysis is a Python library to analyze molecular dynamics simulations.
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Updated
Jun 18, 2024 - Python
MDAnalysis is a Python library to analyze molecular dynamics simulations.
Package to perform minimum-distance distribution analyses of complex solute-solvent interactions
Virtual chemistry simultaion. Visualization of the behavior of particles in two-dimensional and three-dimensional space.
Python library for reading, writing, and converting computational chemistry file formats and generating input files.
automate the setup of atomistic clay models for classical molecular dynamics simulations with GROMACS
A project (and object) for storing, manipulating, and converting molecular mechanics data.
An interoperable Python framework for biomolecular simulation.
Open source library to work with molecular systems
CHAP Docker image source files
A Framework for Metropolis Monte Carlo Simulation of Molecular Systems
MoleculeKit: Your favorite molecule manipulation kit
A hierarchical, component based molecule builder
NWChem: Open Source High-Performance Computational Chemistry
Sire Molecular Simulations Framework
A Python package for extracting and simulating diffuse scattering of X-rays in protein crystals
AIMS: Artificial Intelligence for Molecular Sciences
Rust package for structure biology, bioinformatics and molecular modeling
Etomica is a molecular simulation framework written in Java, developed at the Department of Chemical & Biological Engineering at the University at Buffalo.
Molecular simulation in Julia
Coarse-grained molecular dynamics simulation with the Single-Interaction-Site RNA model
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