mri
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An essay on comparing 2 ML applications on connectomes
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Apr 30, 2017 - TeX
This is the official C-PAC (Configurable Pipeline for the Analysis of Connectomes) brainlife.io app. Currently this app runs either the default pipeline or one of our preconfigured pipelines.
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Feb 7, 2023 - Shell
runs AFNI's 3dQwarp function over a NIfTI file
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Oct 5, 2021 - Shell
The gradients in our High Field MRI were faulting possibly due to high temperature. There are two thermometers in the scanner. I pulled temperature logs going back a few years cleaned it and looked at trends of when the machine was faulting and when it was acting as expected (including comparing temperature profiles of pair specimen across time).
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Nov 28, 2023 - MATLAB
Lecture and practical about Tractography, From Diffusion-weighted MRI to brain anatomical connectivity
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Dec 13, 2017 - HTML
T2 Stimulated Echo Simulation and Fitting
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Sep 6, 2023 - Python
"MRI Fundamental" by KAIST University on Coursera.
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Sep 4, 2022
Deep learning model training for brain tumors detection in magnetic resonance imaging (MRI) scans
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Mar 10, 2023 - Jupyter Notebook
I made this when I was first learning to program - so it's not the most efficient but it works. References for information displayed and MRI images used in the program can be found on the project's web page (linked here).
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Sep 18, 2023 - MATLAB
A download automation tool for the (now-retired) MIDAS platform by Kitware (midasplatform.org)
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Feb 3, 2024 - JavaScript
Sparse Attention U-Net for Mono-modal 3D Left Atrium Semantic Segmentation
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Dec 12, 2023 - Python
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