NanoASV official repo
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Updated
Jun 7, 2024 - Shell
NanoASV official repo
Lightweight bioinformatics pipeline for microbial genome recovery
Snakemake pipeline to analyze retrotransposable element 'omics data.
Nanomotif - a tool for identifying methylated motifs in metagenomic samples
🔬 Genotyping tool for genome-edited samples, utilizing nanopore sequencer target sequencing
A PyTorch Basecaller for Oxford Nanopore Reads
A collection of bioinformatics tools for use with galaxy written at Quadram Institute
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Simple bacterial assembly and annotation pipeline
Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing
Real-Time Nanopore Analysis Pipeline: Repository for developing a real-time Nanopore sequencing pipeline to enhance cancer vaccine research. Features include real-time monitoring, sequencing endpoints, and comparative TCR analysis between Singleron and Nanopore technologies.
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Assembly and binning of metagenomes
A bioinformatics tool for working with modified bases
Automated data mangement for Oxford Nanopore DNA sequencing instruments
Anglerfish - Nanopore reads from Illumina libraries
😎 This repository contains scripts that I wrote for data analysis and visualization.
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
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