A sequence alignment module implementing Needleman-Wunsch algorithm.
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Updated
Feb 25, 2024 - Python
A sequence alignment module implementing Needleman-Wunsch algorithm.
Longest Common Subsequence algorithm. Global Alignment is the Needleman Wunsche algorithm and the local alignment is Smith Waterman algorithm
A compilation of all the programs in my bioinformatics course
GUI for software that can do global pairwise, local pairwise, multiple sequence Alignment.
A visual biology tool widget that can be used for string proximity matching, nucleic acid sequence generation at specified ratios, and match evaluation
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
Implementations of Needleman-Wunsch (global alignment) and Smith-Waterman (local alignment) algorithms using Python.
A dynamic programming algorithm for finding the optimal alignment of two strings.
A python implementation of the Needleman–Wunsch algorithm
algorithm used in bioinformatics to align protein or nucleotide sequences. the algorithm finds the best alignments possible between the 2 strings. Techniques such as Recursive depth first traversing, dynamic programming were used.
Techniques to analyze biological data generated by genome sequencing, proteomics, cell-wide measurements of gene expression changes. Algorithms for single/multiple sequence alignments/assembly. Search algorithms for sequence databases, phylogenetic tree construction algorithms. Algorithms for gene/promoter and protein structure prediction.
Global and local DNA sequence alignment
Global and Local Sequence Alignment
The prog is written to construct the phylogenetic tree (dendrogram) based on DNA/Protein sequences of species given in a dataset using Agglomerative and Divisive Hierarchical Clustering and to compare Agglomerative and Divisive methods
Project in Python language for Bioinformatics course starting october '20, aimed at implementing Needleman-Wunsh algorithm.
Implementacja rozwiązania problemów z platformy: http://rosalind.info/problems/list-view/. Nazwa zadania z rosalinda jest nazwą programu. Opis zadań znajduje się na platformie rosalind.
An algorithm used in bioinformatics to align protein or nucleotide sequences. It was one of the first applications of dynamic programming to compare biological sequences.
Implementation of Needleman-Wunsch algorithm in Python Using Nested Functions.
Global Alignment for DNA/RNA/Protein Sequence. Needleman-Wunsch Algorithm. An Implementation in Web with Python and Flask Back-end
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