Clonal reconstruction from HTS data
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Updated
Oct 27, 2021 - R
Clonal reconstruction from HTS data
HarvardX: PH125.9x: Data Science - Capstone Breast Cancer Diagnosis Project
A project focused on using single-cell RNA sequencing data (scRNA-seq) and pseudo time to improve colon cancer diagnosis and outcomes.
Personalized Network-based Anti-Cancer Therapy Appointment
A systematic approach in using GEO2R for investigating gene expression differences between a low-metastatic group and the highly metastatic MDA-MB-231 (TNBC) human breast cancer cell lines.
Crossmapped phenotype ontologies for the oncology domain
R Package that extracts chemotherapy regimens from drug exposures in the OMOP CDM
Used to obtain the results in "A stochastically curtailed two-arm randomised phase II trial design for binary outcomes" (DOI: 10.1002/pst.2067) by Law et al. Superseded by package "curtailment".
A classifier prototype that predicts cancer cell line sex and genotype from gene-based sequencing read counts.
The decider R package: decision making in multiple-arm oncology dose escalation trials with logistic regression
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