Long read based human genomic structural variation detection with cuteSV
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Updated
May 31, 2024 - Python
Long read based human genomic structural variation detection with cuteSV
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).
genome assembly to pangraphs from illumina to long reads.
The `pacmill` python package is a bioinformatics pipeline that is developed to process microbial 16S amplicon sequencing data and produce PDF reports detailing taxonomical assignments along with other statistics.
A workflow for processing CCS reads of AMF to ASVs using DADA2
Hormiphora californensis genome annotation and supplemental materials related to the genome assembly.
A set of tootkit for dealing with COI amplicons using Pacbio sequencing platform
pacbiohifi sequencing genomes analysis using the verkko, hifiasm and the genomeasm4pg.
a streamlit component for reading and plotting the PacBioHiFi sequencing reads.
De novo repeat inference from long reads
SMP: A Salmonella Methylation analysis Pipeline
a pacbiohifi read check for the quick view of the read types.
a pacbiohifi analyzer for pacbiohifi reads from sequence analysis to the graph alignments.
lastz alignment sorting and plotting the alignment length
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