a streamlit component for reading and plotting the PacBioHiFi sequencing reads.
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Updated
Jun 17, 2024 - Python
a streamlit component for reading and plotting the PacBioHiFi sequencing reads.
a pacbiohifi analyzer for pacbiohifi reads from sequence analysis to the graph alignments.
Long read based human genomic structural variation detection with cuteSV
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
a nextflow pacbiohifi for the genome assembly from the pacbiohifi. It also includes supports for the visualization and genome assessment.
a pacbiohifi read check for the quick view of the read types.
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
awk code for pacbiohifi alignments from verkko and other genome assembly methods
lastz alignment sorting and plotting the alignment length
gawk and awk combined functions for working with pacbiohifi aligned data.
pattern detection in R using the stringR package for the pacbio and the oxford nanopore reads
pacbiohifi sequencing genomes analysis using the verkko, hifiasm and the genomeasm4pg.
long_read_polyATGC_trimmer using regular expression.
genome assembly to pangraphs from illumina to long reads.
code getter for illumina, pacbio, oxford long reads alignments.
bcftools for dealing with bcf files.
polyATGC pacbio or oxford nanopore long reads trimmer.
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
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