Repository dedicated to the experiment section of the paper: Revisiting pangenome openness with k-mers. bioRxiv. (2023).
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Updated
Aug 17, 2023 - R
Repository dedicated to the experiment section of the paper: Revisiting pangenome openness with k-mers. bioRxiv. (2023).
PAPi (Pangenome Analysis Pipeline)
The lumpy skin disease virus (LSDV) pangenome variation graph (PVG)
Recombination between heterologous human acrocentric chromosomes
estimating proportion of the pangenome across the species post orthology runs.
Simulate pangenomes according to the IMG + Neutral models
A small R script for generating pangenome accumulation curves
A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.
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