Tools for analyzing changes in diversity across scales
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Updated
Oct 31, 2024 - R
Tools for analyzing changes in diversity across scales
Spatial analysis and simulation of ecological communities
R package for bootstrapping indices of bipartite ecological networks
q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾
R package for building turnover saturation curves via bootstrapping
A small R script for generating pangenome accumulation curves
Evaluación del impacto del proceso de rarefacción en la detección de comunidades microbianas en datos de amplicones ARNr 16S
R function that resamples randomly and without replacement counts, and calculates rarefied richness (N0), diversity (N1, N2) and evenness (N2/N0) (after Hill (1973) and Birks et al. (2016))
SaSii is a R script for estimating genetic parameters from genotypic data for inferring sample size effects on genetic analysis. Applications of this package include planning the number of samples necessary to obtain robust population genetic estimates and evaluating if obtained sample size is large enough.
Analysis of existing line-point-intercept data to learn whether fewer samples can return similar results
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