A repository for setting up a RNAseq workflow
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Updated
Apr 10, 2017 - R
A repository for setting up a RNAseq workflow
An R-focused pipeline toolkit for reproducibility and high-performance computing
Function-oriented Make-like declarative workflows for R
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
integrated RNA-seq Analysis Pipeline
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
Short course on the targets R package
A minimal example data analysis project with the targets R package
Archetypes for targets and pipelines
Multi-sample somatic variant caller
Example workflows for the drake R package
metaX: a flexible and comprehensive software for processing omics data.
Example Shiny app containing a targets pipeline.
Get started with the {targets} R package in four minutes
Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
Transcriptomics Visualization R package.
Snakemake based pipeline for RNA-Seq analysis
GEO RNA-seq Experiments Processing Pipeline
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