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Jul 28, 2011 - Python
protein-folding
Here are 35 public repositories matching this topic...
A Monte-Carlo Code: Sequential Importance Sampling with Pilot-Exploration Resampling (SISPER) Applied to a 2D Protein Folding
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Oct 16, 2017 - Python
A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.
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Jan 2, 2019 - Python
Lightning-Fast Template-free Protein Folding based on Predicted Residue Contacts and Secondary Structure
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Aug 15, 2019 - Python
sbm-tools is a simple python package for creating, modifying, and maintaining input files for native Structure-Based Model simulations to be used with the popular simulation software GROMACS.
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Mar 11, 2020 - Python
Hybridized distance- and contact-based hierarchical protein folding
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Mar 1, 2021 - Python
ResNetQA: Improved protein model quality assessment by integrating sequential and pairwise features using deep learning
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May 30, 2021 - Python
Implementation of the Triangle Multiplicative module, used in Alphafold2 as an efficient way to mix rows or columns of a 2d feature map, as a standalone package for Pytorch
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Aug 3, 2021 - Python
Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
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Aug 27, 2021 - Python
The working repository for my bachelor thesis with title : "LOGDQN DEEP REINFORCEMENT LEARNING IMPLEMENTATION FOR SOLVING HYDROPHOBIC-POLAR MODEL PROTEIN FOLDING PROBLEM (Tendean et al, 2020)"
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Sep 21, 2021 - Python
Infrastructure template and Jupyter notebooks for running RoseTTAFold on AWS Batch.
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Feb 24, 2022 - Python
Python package for generating Markov state models
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Jul 27, 2022 - Python
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
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Oct 29, 2022 - Python
Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorch module
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Nov 25, 2022 - Python
🧬 ManyFold: An efficient and flexible library for training and validating protein folding models
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Dec 14, 2022 - Python
We seek a classifier that will predict if a protein sequence (+3D coordinates) will fold.
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May 5, 2023 - Python
Singularity recipe for AlphaFold
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Sep 4, 2023 - Python
OPUS-Fold3: a gradient-based protein all-atom folding and docking framework on TensorFlow
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Sep 21, 2023 - Python
"Train Your Reinforcement Learning Algorithm To This Protein Folding Problem Simulation". This is part of my bachelor thesis. The latest version of this env is in the LogDQN_ProteinHP repository.
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Oct 3, 2023 - Python
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