PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
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Updated
May 28, 2024 - Python
PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
Docker Integrated Comparison of Alternative Splicing (AS) Tools. Benchmarking AS tools and genomic alignment tools.
A python package for working with inputs to and outputs from the toil-rnaseq pipeline
circs_snake : a snakemake-based circRNA detection workflow
Pipeline for calling and analyzing variants from RNA-Seq data
Snakemake workflow for Salmon quantification and FastQC quality controls
Snakemake+singularity RNAseq processing pipeline
These snakefiles are prepared for the snakemake pipeline for the RNASeq analysis
Snakemake workflow designed to perform RNASeq transcrpotime expression estimation with Salmon
Snakemake pipeline for alternative slicing analysis with VAST-TOOLS
Simple Snakemake RNA-Seq pipeline
An RNASeq snakemake workflow using the Tuxedo suite.
In this repository : i have created RNAseq pipeline using snakemake rules
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