This repo contains scripts to analyze Single-Cell RNA-Seq data obtained from human enteriod cell culture.
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Updated
Dec 28, 2022 - R
This repo contains scripts to analyze Single-Cell RNA-Seq data obtained from human enteriod cell culture.
CD24 CART single cell analysis
STREAM: enhancer-driven gene regulatory networks inference from single-cell RNA-seq and ATAC-seq data
Triple single cell analysis of microglia cell types for studying PIEZO1 alterations in Alzheimer patients
TCM: visualizes trajectories and cell populations from single cell data
simulating dysregulated gene expression in single cell transcriptome data
R scripts used to analyze single-nucleus RNA-seq data generated from in vitro differentiated pancreatic organoids, described in Huang, L. et al. 2021 (in press).
Single Cell RNA-seq analysis of Persister Cells to unearth key stress pathways and core, differential genes of those respective pathways
Single Cell RNA_Seq Analysis of Medicago Truncatula Data
Multi Resolution Cluster Optimization
R Shiny app for Vitessce, an integrative and interactive data visualization tool for exploration of spatial single-cell experiments.
Single Nuclei RNA Sequencing analysis of MND muscle cultures for the paper "Impaired signaling for neuromuscular synaptic maintenance is a feature of Motor Neuron Disease" by Ding et al, published in Acta Neuropathologica Communications.
Visualize expression of genes of interest after Conos.Cluster has been ran.
SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.
An R package for cell type nomenclature
Scripts for the analysis of single-cell epigenomics data using Sparse-FDA
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