A simple Snakemake profile for Slurm without --cluster-config
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Updated
Jun 20, 2024 - Shell
A simple Snakemake profile for Slurm without --cluster-config
Contains example recipes that demonstrate how to build HPC systems using AWS services and solutions.
Shell scripts tools for monitoring and organizing jobs on HPC clusters
Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformatician's scripts/ folder
Bash functions to ease work on supercomputer using SLURM
Entry point for developing distributed applications with PyTorch, Slurm and Singularity on MareNostrum5 Supercomputer
DMTCP scripts to get Python scripts working with SLURM.
Shell script to prepare protein PDBs for GROMACS molecular dynamics simulations, with SLURM script included to run md with hpc
Monitoring Dashboard for AWS ParallelCluster
StarCCM+ Design Manager and single run submission for cluster with SLURM job scheduler.
Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
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