A cookiecutter template for Snakemake workflows
-
Updated
Feb 2, 2022 - Python
A cookiecutter template for Snakemake workflows
Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
A workflow for creating small NGS test data sets, useful for continuous integration.
StaG Metagenomic Workflow Collaboration
MetScale: snakemake workflows to scale metagenome analyses
Pipeline for analysis of Dropseq single cell data
Trimming and QC on NGS data
Pipeline for lncRNA, Circular RNA, and novel mRNA identification.
🐍🔧 Snakemake wrappers for GATK.
Snakemake workflow designed to annotate VCF files withe SnpEff / SniSift
Multisample DNAseq variant calling pipeline for use in diagnostics
Scaling studies on high-performance clusters using Snakemake workflows
Snakemake workflow to run transdecoder + trinotate
snakemake workflow for random forest based feature selection on chromHMM data
Snakemake based workflow for analysis of dnaseq data for calling germline/somatic mutations
Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2
🐍 Snakemake wrappers for bioinformatics.
Snakemake pipeline to map DNA datasets to a given reference genome using BWA MEM and Samtools.
Map and post-process your bams for SNP calling
Add a description, image, and links to the snakemake-workflows topic page so that developers can more easily learn about it.
To associate your repository with the snakemake-workflows topic, visit your repo's landing page and select "manage topics."