🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
-
Updated
Jun 7, 2024 - R
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
R data package for pre-compiled somatic mutations from TCGA cohorts (from Broad Firehose and TCGA MC3 Project)
R wrapper for utilizing the SigProfilerMatrixGenerator framework
An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use o…
An R wrapper for running the SigProfilerPlotting framework
Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations
Tumour-in-Normal Contamination assessment with evolutionary theory.
R tools to mine & craft somatic mutations from cancer genomes
Mutation tree from binary bulk sequencing data
a Nextflow ACE-Seq calling and annotation pipeline based on DKFZ-ODCF/ACEseqWorkflow
R package containing a R Shiny app for somatic genomic variants interpretation and a tool suite to deal with an underlying local structured database.
Add a description, image, and links to the somatic-variants topic page so that developers can more easily learn about it.
To associate your repository with the somatic-variants topic, visit your repo's landing page and select "manage topics."