A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
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Updated
Apr 21, 2024 - Perl
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
Fungal Identification Pipeline
Official GitHub repository for the R package "Species Identity and Evolution in R" (spider)
This repository contains data and code from the manuscript, "Analysis of biodiversity data suggests that species are hidden in predictable places".
An R Shiny App that assesses sampling effects (e.g. sample size and BEAST parameters) on GMYC output for species delimitation.
Scripts written in R
Molecular Sequence Manipulation Tools
This repository includes scripts and data used in Sgarlata et al., 2023 entitled "The Genomic Diversity of the Eliurus genus in northern Madagascar with a Putative New Species".
Clustering using Gaussian mixture modeling for species delimitation and classification
Biogeography and species delimitation of the rheophilic suckermouth-catfish genus _Pseudolithoxus_ (Siluriformes: Loricariidae), with the description of a new species from the Brazilian Amazon
created to work on with data for the article
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