A Python-based module for creating flexible and robust spike sorting pipelines.
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Updated
Jul 13, 2024 - Python
A Python-based module for creating flexible and robust spike sorting pipelines.
Fast spike sorting with drift correction for up to a thousand channels
An automated, end-to-end, machine-learning-based spike sorting pipeline following the DeepCluster method
TravNet is a project towards the full automation of spike sorting, the identification of neurons from noise. This is achieved by training neural networks on sorts completed by human experts.
Spike Cluster Score (SCS) is a clustering performance metric designed with the purpose of spike sorting in mind.
An Engine for Dynamic Enhancement and Noise Overcoming in Spatiotemporal Multimodal Neural Observations via High-density Microelectrode Arrays
Automatic and manual spike sorting based on SpikeInterface
Neural spike sorting algorithm based on iso-cut clustering and template matching in raw voltage space for the detection of near-simultaneous spike events.
Automatic spike sorting, cluster visualization, spike sorting GUIs
Fast and scalable spike sorting in python
WaveClus: Unsupervised Spike Sorting Algorithm
A study of how autoencoders fare in the domain of Spike Sorting. Various autoencoder architectures have been tested.
Implementation of semi-automatic spike interface pipeline on tungsten WARP data for the myriad cluster
Python Implementation of GLMCC (generalized linear model for spike cross-correlations)
Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.
YASS: Yet Another Spike Sorter
Converts moutainsorted clusters to phy for curation using SpikeInterface. Includes a plugin to add mountainsort cluster metrics to phy.
Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.
a graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting performance
Python-based module with spike sorter wrappers and a simple API for running them.
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