Python implementation for René Thomas's Framework
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Updated
Oct 23, 2021 - Python
Python implementation for René Thomas's Framework
A Bio2BEL package for converting the Gene Ontology (GO) to BEL
Ontology for whole-cell modeling
Supplementary Material for Multistate Control Paper
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
A Bio2BEL package for mir2disease (http://www.mir2disease.org)
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
A Bio2BEL package for converting InterPro to BEL
Reproduce the figures in "The genetic basis for adaptation of model-designed syntrophic co-cultures"
DISBi is a framework to build Django apps to manage and integrate Sytems Biology data.
Variational Gradient Matching for Dynamical Systems
A front-end visualization devoted to the knowledge about the human Tau protein
Spicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data
BraneMF: Integration of Biological Networks for Functional Analysis of Proteins
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
The repository contains the code used to perform a rigorious quantitative analysis of enzyme substrate binding.
Generate a summary of metadata annotations in the BioModels database
Simplified model of mTOR written using PySB. mTOR is modeled such that its activation is due to insulin receptor activation, and inhibited by binding of rapamycin-FKBP complex.
A research biochemical network explorer and genetic cytohistological encyclopedia.
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