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@bio2bel

Bio2BEL

Enabling Biological Expression Language to act as a semantic integration layer for multi-modal and multi-scale data sets in the life sciences

Popular repositories

  1. bio2bel Public

    A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)

    Python 16 5

  2. kegg Public

    A Bio2BEL package for integrating pathway-related information from KEGG in BEL

    Python 9 4

  3. drugbank Public

    A Bio2BEL package for DrugBank (https://www.drugbank.ca)

    Python 5 5

  4. reactome Public

    Integration of pathway-related information from Reactome in BEL

    Python 4 1

  5. hmdb Public

    A Bio2BEL package for converting the Human Metabolite Database (HMDB) to BEL

    Python 3 1

  6. pubchem Public

    NCBI PubChem to BEL

    Python 3

Repositories

  • kegg Public

    A Bio2BEL package for integrating pathway-related information from KEGG in BEL

    Python 9 MIT 4 1 1 Updated Feb 11, 2022
  • bio2bel Public

    A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)

    Python 16 MIT 5 21 1 Updated Nov 3, 2021
  • drugbank Public

    A Bio2BEL package for DrugBank (https://www.drugbank.ca)

    Python 5 MIT 5 3 0 Updated Dec 14, 2020
  • reactome Public

    Integration of pathway-related information from Reactome in BEL

    Python 4 MIT 1 0 0 Updated Nov 18, 2020
  • wikipathways Public

    Integration of pathway-related information from WikiPathways in BEL

    Python 2 MIT 1 0 0 Updated Nov 18, 2020
  • msig Public

    Integration of pathway-related information from MSigDB in BEL

    Python 2 MIT 0 0 0 Updated Nov 18, 2020
  • dbsnp Public

    Converting dbSNP mutation information to BEL

    Python 0 MIT 0 1 0 Updated Jul 20, 2020
  • hgnc Public

    Hugo Gene Nomenclature Consortium (HGNC) to BEL

    Python 1 MIT 0 1 0 Updated Mar 29, 2020
  • go Public

    A Bio2BEL package for converting the Gene Ontology (GO) to BEL

    Python 0 MIT 0 1 0 Updated Mar 28, 2020
  • mirtarbase Public

    Serializes text-mined miRNA-target interactions to BEL

    Python 0 MIT 0 7 0 Updated Mar 12, 2020

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