Blender plugin for rendering brain tractography (.tck) files!
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Updated
May 31, 2022 - Python
Blender plugin for rendering brain tractography (.tck) files!
Code for randomised tractogram filtering using rSIFT
These scripts are used to generate brain surface and tract files (in .obj format, parcellated and registered) from Freesurfer recon-all and trac-all packages.
Package facilitating the tracking of sub-cortical U-Fibers
A fast python tool for extracting diffusion-based brain connectivity
White Matter Analysis Pipeline (WMAP)
A tool for extracting diffusion-based brain connectivity
Streamline Tractography Utilities for Deep Learning
Tractometry-based metrics for characterizing white matter lesions within fibre pathways
Convolutional-recurrent neural networks approximate diffusion tractography from T1-weighted MRI and associated anatomical context
Connectivity-based parcellation
We provide a method to extract the tractographic features from structural MR images for patients with brain tumor
This repository extracts the tractograpic feature, other first-order features and the state-of-the-art feature from the stroke lesion. A random forest regressor is used with one type of feature to predict the modified Rankin Scale of stroke patients.
This repository contains the code of UtiliziNg tRActography to uncoVEr muLti-fixel microstructure (UNRAVEL).
Analysis of the structural connectivity of diffusion data
Magnetic Resonance Imaging data processing pipelines with a strong emphasis on the diffusion weighted MRI (DWI) modality and tractogram estimation
TRAMPOLINO (TRActography Meta-Pipeline cOmmand LINe tOol) is a CLI for brain tractography. It leverages Nipype to offer an immediate way to reconstruct an orientation distribution function, use it to track the streamlines and eventually filter them, all using existing software toolboxes.
Python tool for spatially normalizing diffusion MRI data
Extension for 3D slicer that provides a module and a python package for fiber clustering and tractography analysis.
Tractography learning
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