Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
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Updated
Jun 25, 2024 - Python
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
Hexrays Toolbox - Find code patterns within the Hexrays ctree
non-redundant, compressed, journalled, file-based storage for biological sequences
provides common tools and lookup tables used primarily by the hgvs and uta packages
This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.
OpenAPI-based REST interface to biological sequences and sequence metadata
[in development] Proof-of-Concept variation translation, validation, and registration service
Visualize microbial evolution at the SNP level!
language-agnostic testing for inheritance models
A Prototype for Defining the Ancestral Alleles for Ones that Modify Human Phenotypes
biocommons website
A collection of web tools for biologists
A relational database stores per sample based sequencing data.
A Snakemake-based pipeline for gene mapping in Triticeae.
a core part of the MiModD package for use as a library
A tool for automatic classification of sequence variants according to ACMG criteria.
A Latch Bio workflow to call DNA sequence variants
to analyze multiple VCF files and generate a summary of variant metrics
Deterministic and standard extractor of SNVs, indels and structural variants (SVs) from VCF files.
Filter a VCF to discard false positive variants
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