A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
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Updated
Jan 30, 2024 - Python
A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
vSNP -- validate SNPs
Clinical Whole Genome and Exome Sequencing Pipeline
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
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a SGE, python, implementation of the ENCODE consortium whole genome bisulfite sequencing pipeline.
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Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)
vSNP -- validate SNPs
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Predict mechanism underlying structural variants
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
Target site duplication assessment from alignment file and genomic location of insertion sites.
A snakemake pipeline for tick determination from ONT whole genome sequencing samples.
Archived code for analyses in "Genomic signatures of divergent ecological strategies in a recent radiation of Neotropical wild cats" (Ramirez et al. 2022, MBE)
Python scripts created in the analysis of Anopheles mosquito genomes
Analysis code for "Whole genome doubling drives oncogenic loss of chromatin segregation"
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