A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
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Updated
Jan 30, 2024 - Python
A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
vSNP -- validate SNPs
Clinical Whole Genome and Exome Sequencing Pipeline
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)
a SGE, python, implementation of the ENCODE consortium whole genome bisulfite sequencing pipeline.
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
vSNP -- validate SNPs
Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using ANGSD and related softwares. Flexible to datasets that combine high/low coverage and historical/fresh samples.
An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
Genomic data manipulation tool
As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
Archived code for analyses in "Genomic signatures of divergent ecological strategies in a recent radiation of Neotropical wild cats" (Ramirez et al. 2022, MBE)
Analysis code for "Whole genome doubling drives oncogenic loss of chromatin segregation"
AUIR: A high-throughput analysis pipeline for influenza sequence data
A tool to find reads supporting/opposing structural variant breakpoints
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