#
whole-genome-sequencing
Here are
30 public repositories
matching this topic...
As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
Updated
May 17, 2024
Python
Updated
May 9, 2024
Python
A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
Updated
May 8, 2024
Python
Clinical Whole Genome and Exome Sequencing Pipeline
Updated
May 7, 2024
Python
Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses. Flexible to datasets that combine high/low coverage and historical/fresh samples.
Updated
Apr 23, 2024
Python
An interacitve python interface for inspection of somatic mutations
Updated
Apr 18, 2024
Python
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Updated
Apr 10, 2024
Python
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing
Updated
Mar 21, 2024
Python
A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
Updated
Jan 30, 2024
Python
mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
Updated
May 29, 2024
Python
Target site duplication assessment from alignment file and genomic location of insertion sites.
Updated
Dec 21, 2023
Python
Analysis of error profiles of Indels and structural variants in deep sequencing data
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Aug 28, 2023
Python
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
Updated
Aug 17, 2023
Python
Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)
Updated
Aug 6, 2023
Python
An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
Updated
Jul 13, 2023
Python
A snakemake pipeline for tick determination from ONT whole genome sequencing samples.
Updated
Jun 13, 2023
Python
Analysis code for "Whole genome doubling drives oncogenic loss of chromatin segregation"
Updated
Jan 5, 2023
Python
Workflow designed for Download, QC, Assemble, Variant calling, and Annotate bacterial WGS in batch
Updated
Jan 3, 2023
Python
Updated
Nov 21, 2022
Python
Calculating the coverage depth for each coding gene and the percentage of each gene covered at ≥ 10X depth.
Updated
Sep 7, 2022
Python
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