This ebook has information about life science databases, their SPARQL endpoints, what information they hold, what data models they use, and how to query those.
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Updated
Nov 12, 2023 - Groovy
This ebook has information about life science databases, their SPARQL endpoints, what information they hold, what data models they use, and how to query those.
KNIME nodes for WikiPathways.
Repository for code to create the Europe PMC external links
WikiPathways Summit Planning
R client package for the WikiPathways API.
Collect chemical reactions from a GPML file and look for matching Rhea equations.
Project to convert content of WPRDF into nanopublications.
Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last…
Ready-to-use curated genesets for cinaR
OpenAPI to extract information from WikiPathways.
Integration of pathway-related information from WikiPathways in BEL
#metawinterschool contribution by BiGCaT
Temporary repository of RDF of selected pathways from WikiPathways, supporting the Wikidata bot.
A compilation of pathway gene sets
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