UNDER CONSTRUCTION: CRISPR sgRNA quantification pipeline
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Updated
Sep 27, 2019 - Nextflow
UNDER CONSTRUCTION: CRISPR sgRNA quantification pipeline
ICGC-ARGO Sanger WXS Somatic Variant Calling Workflow
Create required reference genome index files for WGS data analysis
Projet de Hackathon du master AMI2B 2022 - Pipeline d'analyse RNA-Seq écrit en Nextflow
Bioinformatics pipeline using a sliding window approach to create a sequence of trees from multiple sequence alignments.
UNDER CONSTRUCTION: Mouse brain morphometry analysis pipeline for MRI imaging data
See the main fork of this repository here >>>
Simple bacterial assembly and annotation pipeline
ICGC ARGO GATK Mutect2 Somatic Variant Calling Workflow
Single Cell guided Pangenome analysis pipeline using SPAdes, CheckM, GTDB-Tk, Prokka, Roary and extensive quality control.
Chip-Seq pipeline
Classification and phylogenetic lineage assignment of Rift Valley fever virus consensus genomes using the glycoprotein Gn/G2 gene found within the M-segment of the virus genome
Single-stranded DNA Sequencing (SSDS) nf-core pipeline
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