Hello everyone! I am working non-stop in wet-lab laboratories since 2009 where I started as a trained lab technician. I finished my PhD december 2022 in the group of Prof. Rob Russell. My job there included managing 'my own' laboratory, which includes supervising a permanent technical assistant & the occasional students.
My research focus lies on interrogating human health and disease & I try to use my insights and knowledge to answer questions related to this using wet-lab and dry-lab approaches.
During my PhD I started to delve into Python and R and I try to moderate between the wet-lab point of view and the bioinformation point of view when approaching bioinformatics problems.
Collaborative project with other members of the Russell lab. Will be published & made online soon.
More info will follow once Kinase Resistance is published and the repositories go public.
A variant of this is already used in the Kinase Resistance project. The version here will be more generalized and hence hopefully more useful for the wider scientific community.
More info will follow once Kinase Resistance is published and the repositories go public.
This is my pet project. It follows a holistic approach by combining a trove of publicly available information on a protein of interest to determine whether a variants may be functional, and then also providing hints at how the particular variants may influence protein function. I am using data mining as well as interrogation of 3D structures combined with naive bayesian combination and a random forest classifier to arrive at a verdict. This aproach has a fully functional web app where the user simply provides a protein (gene name or uniprot accession) and a variant (or multiple variants), coded in R-Shiny.
More info will follow once PROTEORIZER is published and the repository goes public.
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Schmenger, T., Diwan, G.D., Singh, G. et al. Never-homozygous genetic variants in healthy populations are potential recessive disease candidates. npj Genom. Med. 7, 54 (2022). https://doi.org/10.1038/s41525-022-00322-z -
Samantha Ebersoll, Blessing Musunda, Torsten Schmenger, Natalie Dirdjaja, Mariana Bonilla, Bruno Manta, Kathrin Ulrich, Marcelo A. Comini, R. Luise Krauth-Siegel, A glutaredoxin in the mitochondrial intermembrane space has stage-specific functions in the thermo-tolerance and proliferation of African trypanosomes, Redox Biology, Volume 15, 2018, https://doi.org/10.1016/j.redox.2018.01.011 -
Osswald, M., Jung, E., Sahm, F. et al. Brain tumour cells interconnect to a functional and resistant network. Nature 528, 93–98 (2015). https://doi.org/10.1038/nature16071