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pyslim test run fails #32

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SBNoor opened this issue Mar 5, 2019 · 3 comments
Closed

pyslim test run fails #32

SBNoor opened this issue Mar 5, 2019 · 3 comments

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@SBNoor
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SBNoor commented Mar 5, 2019

I installed pyslim as mentioned in the readme document. However, when I ran the following command:

python -m nose tests

it gives me the following error:
screenshot 2019-03-05 at 15 30 24

I installed SLiM and msprime as suggested. The test runs for SLiM are working and for msprime too. However when I do a test run for pyslim, it fails every time. I activate my msprime environment and then run the pyslim command. Could you tell me what possibly could be causing this?

@jeromekelleher
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This is because some internal APIs were moved to tskit with msprime 0.7.0. I'll open a PR to fix this in a minute.

I have the same error, so your installation is probably fine.

@SBNoor
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SBNoor commented Mar 5, 2019

So do I need to install msprime again?

@jeromekelleher
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So do I need to install msprime again?

No, I think your installation is fine, it's just some of the test cases are a little out of date.

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