Functions for simulating PDE models with an adaptive Runge-Kutta scheme
pip install pde-rk
The repository contains an example notebook that demonstrates the method using the PAR polarity model (Goehring et al., 2011). To run the notebook in Colab, click here:
This package has been used in the following publications:
Illukkumbura, R., Hirani, N., Borrego-Pinto, J., Bland, T., Ng, K., Hubatsch, L., McQuade, J., Endres, R.G., and Goehring, N.W. (2023). Design principles for selective polarization of PAR proteins by cortical flows. Journal of Cell Biology.
Illukkumbura, Bland, T. and Goehring, N.W. (2020). Patterning and polarization of cells by intracellular flows. Current Opinion in Cell Biology.
To add your paper to this list, please use the issues form, or create a pull request
This work is licensed under a Creative Commons Attribution 4.0 International License.
