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Pos fix for ref allele verification #14

Merged
merged 40 commits into from
Nov 29, 2023
Merged

Pos fix for ref allele verification #14

merged 40 commits into from
Nov 29, 2023

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tkmamidi
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Fixes verification code for reference allele query from UCSC.

@tkmamidi tkmamidi closed this Nov 29, 2023
@tkmamidi tkmamidi deleted the pos_fix branch November 29, 2023 22:59
@tkmamidi tkmamidi restored the pos_fix branch November 29, 2023 23:01
@tkmamidi tkmamidi reopened this Nov 29, 2023
@ManavalanG
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LGTM :)

@ManavalanG ManavalanG self-requested a review November 29, 2023 23:10
@tkmamidi tkmamidi merged commit dbfa9f0 into main Nov 29, 2023
@tkmamidi tkmamidi deleted the pos_fix branch November 29, 2023 23:13
wilkb777 pushed a commit that referenced this pull request Dec 4, 2023
* fixing cache limit

* cleanup

* working about page

* add keys to config to display info

* re-arranging columns to display

* rename header

* testing out parse

* working website

* adding submit button

* initial sidebar expanded

* repo reorg and readme updates

* download button change

* python version in readme

* adding matplotlib for streamlit

* adding protobuf

* version

* protobuf==3.19

* trying with conda

* removing python

* yml edit

* package versions using mamba and removing about page

* adding pyaml

* upgrading pyaml

* updating readme and add comments to script

* add more info to app and adjust readme for env creation

* pip version

* adds functionality to verify reference allele from reference genome

* A bit more description about the app

* removes unused files

* variant info verification adjustments to accomodate indels

* returns json from function

* add pip env creation example and ref indel verification

* moving the annotations table above the predictions for the flow of information

* Submit button refactoring to accomodate page refresh after choosing a transcript

* initialize session state

* fixing the query position

* delete unwanted lines
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2 participants