fix(pipeline): make toolbox available for airflow

pipeline/Dockerfile

@@ -21,22 +21,23 @@ RUN apt update && apt install -y nodejs
 RUN apt update && apt install -y build-essential libcairo2-dev libpango1.0-dev libjpeg-dev libgif-dev librsvg2-dev
 RUN npm install -g canvas
 
+# CCI Toolbox
+
+ADD initialize-conda.sh /home/airflow/initialize-conda.sh
+RUN ls -l ~
+RUN chmod +x /home/airflow/initialize-conda.sh
+
+USER airflow
+
 # conda
 RUN mkdir -p ~/miniconda3
 RUN wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-aarch64.sh -O ~/miniconda3/miniconda.sh
 RUN bash ~/miniconda3/miniconda.sh -b -u -p ~/miniconda3
 RUN rm -rf ~/miniconda3/miniconda.sh
 
+ENV PATH="${PATH}:~/miniconda3/bin"
 
-
-# CCI Toolbox
-
-ADD initialize-conda.sh /root/initialize-conda.sh
-RUN ls -l ~
-RUN chmod +x ~/initialize-conda.sh
 RUN bash ~/initialize-conda.sh
 
-USER airflow
-
 # xarray
 RUN pip install xarray netcdf4 h5netcdf

pipeline/initialize-conda.sh

@@ -1,9 +1,10 @@
 #!/bin/bash
 
-~/miniconda3/bin/conda init bash
+conda init bash
+
 source ~/.bashrc
 
-conda create -y --name ect --channel conda-forge esa-climate-toolbox↲
+conda create -y --name ect --channel conda-forge esa-climate-toolbox
 conda info --envs
 
-conda activate ect
+echo 'source activate ect' >> ~/.bashrc