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Singleplex Polaris app #15

Merged
merged 32 commits into from
Feb 1, 2022
Merged

Singleplex Polaris app #15

merged 32 commits into from
Feb 1, 2022

Commits on Jan 26, 2022

  1. Refactor Polaris app to SpotDetection

    @elaubsch
    elaubsch committed Jan 26, 2022
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  2. Add clip flag

    @elaubsch
    elaubsch committed Jan 26, 2022
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  3. Add SpotDetection import

    @elaubsch
    elaubsch committed Jan 26, 2022
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Commits on Jan 27, 2022

  1. Implement singleplex application

    @elaubsch
    elaubsch committed Jan 27, 2022
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  2. PEP8

    @elaubsch
    elaubsch committed Jan 27, 2022
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  3. Update docstring

    @elaubsch
    elaubsch committed Jan 27, 2022
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  4. Update docstring

    @elaubsch
    elaubsch committed Jan 27, 2022
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  5. Write docstring

    @elaubsch
    elaubsch committed Jan 27, 2022
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  6. PEP8

    @elaubsch
    elaubsch committed Jan 27, 2022
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  7. Add tests

    @elaubsch
    elaubsch committed Jan 27, 2022
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  8. Update numpy requirement

    @elaubsch
    elaubsch committed Jan 27, 2022
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  9. PEP8

    @elaubsch
    elaubsch committed Jan 27, 2022
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  10. Update whitespace 

    Co-authored-by: Morgan Schwartz <msschwartz21@gmail.com>
    @elaubsch @msschwartz21
    elaubsch and msschwartz21 committed Jan 27, 2022
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  11. Remove comment 

    Co-authored-by: Morgan Schwartz <msschwartz21@gmail.com>
    @elaubsch @msschwartz21
    elaubsch and msschwartz21 committed Jan 27, 2022
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  12. Remove comment 

    Co-authored-by: Morgan Schwartz <msschwartz21@gmail.com>
    @elaubsch @msschwartz21
    elaubsch and msschwartz21 committed Jan 27, 2022
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  13. Update deepcell_spots/applications/polaris.py 

    Co-authored-by: Morgan Schwartz <msschwartz21@gmail.com>
    @elaubsch @msschwartz21
    elaubsch and msschwartz21 committed Jan 27, 2022
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  14. Update deepcell_spots/applications/polaris.py 

    Co-authored-by: Morgan Schwartz <msschwartz21@gmail.com>
    @elaubsch @msschwartz21
    elaubsch and msschwartz21 committed Jan 27, 2022
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  15. Triple quotes to single quotes 

    Co-authored-by: Morgan Schwartz <msschwartz21@gmail.com>
    @elaubsch @msschwartz21
    elaubsch and msschwartz21 committed Jan 27, 2022
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  16. Rename _predict_segmentation to _predict

    @elaubsch
    elaubsch committed Jan 27, 2022
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  17. Merge branch 'singleplex-app' of https://github.com/vanvalenlab/deepc… 

    …ell-spots into singleplex-app
    @elaubsch
    elaubsch committed Jan 27, 2022
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Commits on Feb 1, 2022

  1. Remove model

    @elaubsch
    elaubsch committed Feb 1, 2022
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  2. Rename spots variables

    @elaubsch
    elaubsch committed Feb 1, 2022
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  3. Update segmentation model

    @elaubsch
    elaubsch committed Feb 1, 2022
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  4. Add nuclear segmentation

    @elaubsch
    elaubsch committed Feb 1, 2022
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  5. Test errors

    @elaubsch
    elaubsch committed Feb 1, 2022
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  6. Update example notebooks

    @elaubsch
    elaubsch committed Feb 1, 2022
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  7. Change no seg result

    @elaubsch
    elaubsch committed Feb 1, 2022
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  8. Update docstring 

    Co-authored-by: Morgan Schwartz <msschwartz21@gmail.com>
    @elaubsch @msschwartz21
    elaubsch and msschwartz21 committed Feb 1, 2022
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  9. Edit docstrings and warnings

    @elaubsch
    elaubsch committed Feb 1, 2022
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  10. Merge branch 'singleplex-app' of https://github.com/vanvalenlab/deepc… 

    …ell-spots into singleplex-app
    @elaubsch
    elaubsch committed Feb 1, 2022
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  11. Fix bug in tests

    @elaubsch
    elaubsch committed Feb 1, 2022
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  12. Update notebook outputs

    @elaubsch
    elaubsch committed Feb 1, 2022
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