My Jupyter notebooks

Ribosome profiling

Gene differential expression with DESeq2 from Python and MA plot. Recommended usage is to download R script run_deseq.r and Python script de.py, and run the latter on the command line. de_ma.py is optional and also usable on the command line. Python scripts are converted to Notebooks using jupytext.

Notebooks are distributed under the MIT License (see /LICENSE).

Name		Name	Last commit message	Last commit date
Latest commit History 8 Commits
deseq_from_python		deseq_from_python
ribosome_profiling		ribosome_profiling
LICENSE		LICENSE
README.md		README.md