Improve construct errors #3866
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Improve construct errors #3866
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…ooking like symbolic SVs
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Changelog Entry
To be copied to the draft changelog by merger:
vg constructshould no longer fail assertions and will instead report errors.vg constructnow handles IUPAC codes in the reference as Ns even if they are covered by symbolic structural variantsDescription
This removes all the asserts from constructor.cpp and adds more useful error checking.
It also revises how sequences are sanitized and related warnings an errors are reported.
This will fix #3838.